PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4762_iso_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 114aa    MW: 13208.1 Da    PI: 7.911
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4762_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-0578100323
                                         ET..TTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                                         C+   Cgk+F +   L++H   H
  cra_locus_4762_iso_5_len_821_ver_3  78 CSyeGCGKTFIDAGALRKHSHIH 100
                                         77779**************8776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.71E-771113No hitNo description
Gene3DG3DSA:3.30.160.601.5E-1471102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78376105IPR007087Zinc finger, C2H2
SMARTSM003550.003276100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028078100IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-4103114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
METHMNHNLF ERRSITKSRA PAVKWFKEWV PQDVVATGGK CQLLRWVNEA TLKALREKKE  60
PELPEPEPEP TTEVLFLCSY EGCGKTFIDA GALRKHSHIH GERQYICHYE NCGK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850433.12e-67PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-44Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLA0A022QG142e-67A0A022QG14_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000234591e-62(Solanum tuberosum)